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Predictabel package

WebMar 1, 2011 · We developed PredictABEL, a package in R that covers descriptive tables, measures and figures that are used in the analysis of risk prediction studies such as … WebDescription. The function computes unweighted or weighted genetic risk scores. The relative effects (or weights) of genetic variants can either come from beta coefficients of a risk …

R-Forge: GenABEL: R Development Page

Web#' An R package for the analysis of (genetic) risk prediction studies. #' #' Fueled by the substantial gene discoveries from genome-wide association #' studies, there is increasing interest in investigating the predictive #' ability of genetic risk models. To assess the performance of genetic risk #' models, PredictABEL includes functions for the various … WebMar 24, 2011 · PredictABEL, a package in R that covers descriptive tables, measures and figures that are used in the analysis of risk prediction studies such as measures of model fit, predictive ability and clinical utility, and risk distributions, calibration plot and the receiver operating characteristic plot, is developed. The rapid identification of genetic markers for … chern number code https://voicecoach4u.com

fitLogRegModel function - RDocumentation

WebSep 6, 2012 · You don't need to use the data command. You can just pass your data to the function. riskmodel <- fitLogRegModel (data=mydataset, cOutcome=2, cNonGenPreds=3:10, cNonGenPredsCat=6:8, cGenPreds=c (11, 13:16), cGenPredsCat=0) The example uses data (ExampleData) so that it can make data that is in the package available to you. WebThe function fits a standard GLM function for the logistic regression model. This function can be used to construct a logistic regression model based on genetic and non-genetic predictors. The function also allows to enter the genetic predictors as a single risk score. For that purpose, the function requires that the dataset additionally ... WebMar 13, 2024 · PredictABEL-package: An R package for the analysis of (genetic) risk prediction... predRisk: Function to compute predicted risks for all individuals in... reclassification: Function for reclassification table and statistics. riskScore: Function to compute genetic risk scores. simulatedDataset: Function to construct a simulated dataset … flights from lebanon to amman

R: IDI/NRI-based selection of a linear, logistic, or Cox...

Category:R: An R package for the analysis of (genetic) risk prediction...

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Predictabel package

R: An R package for the analysis of (genetic) risk prediction...

WebWe included functions to assess the performance of risk models. The package contains functions for the various measures that are used in empirical studies, including univariate … WebApr 15, 2016 · Problems with using plotCalibration() from the predictABEL package in R. Ask Question Asked 6 years, 11 months ago. Modified 4 years, 5 months ago. Viewed 831 times Part of R Language Collective Collective 1 I’ve been having some trouble ...

Predictabel package

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WebPackage ‘survIDINRI’ October 14, 2024 Type Package Title IDI and NRI for Comparing Competing Risk Prediction Models with Censored Survival Data Version 1.1-2 Date 2024-4-23 Author Hajime Uno, Tianxi Cai Maintainer Hajime Uno Description Performs inference for a class of measures to compare competing risk … WebFor exporting R data into SPSS, SAS and Stata data, use functions in the the foreign package. Several functions in this package depend on other R packages: (1) Hmisc, is …

WebNational Center for Biotechnology Information WebThe type of index to be evaluated by the improveProb function (Hmisc package): z-score of IDI or of NRI startOffset: Only terms whose position in the model is larger than the startOffset are candidates to be removed elimination.bootstrap.steps: The number of bootstrap loops for the backwards elimination procedure trainFraction

WebWhen fileplot is not specified, the plot is not saved. plottype. The format in which the plot is saved. Available formats are wmf, emf, png, jpg, jpeg, bmp, tif, tiff, ps, eps or pdf. Foe … WebWe developed PredictABEL, a package in R that covers descriptive tables, measures and figures that are used in the analysis of risk prediction studies such as measures of model …

WebMar 13, 2024 · PredictABEL-package: An R package for the analysis of (genetic) risk prediction... predRisk: Function to compute predicted risks for all individuals in...

Web#' An R package for the analysis of (genetic) risk prediction studies. #' #' Fueled by the substantial gene discoveries from genome-wide association #' studies, there is increasing … flights from learmonth to karrathaWebMar 9, 2024 · PredictABEL: Assessment of Risk Prediction Models. We included functions to assess the performance of risk models. The package contains functions for the various … chern number pythonWebMay 2, 2024 · Search the PredictABEL package. Vignettes. Package overview Functions. 19. Source code. 3. Man pages. 17 ... The functions are available in the package GenABEL to accurately compute risk scores when the DNA strands are different or the risk alleles are coded differently in the study data and the data used in meta-analysis. chern number in real space